Example Project

This is an example project demonstrating the IPA Project Template. The project structure initialized by this template organizes data and software in a way that supports growth of your research project in size as well as in complexity without sacrificing clarity.

Overview of the IPA project structure. Everything related to your project is located within the example-project directory.

Reproduce the Results

The current view of the project represents a finalized image processing and analysis project. You can think of it as a published research project. To reproduce the results, you need to clone the repository and follow the installation instructions, download the data, and run the processing steps.

How to Work with the Project Template

If you are interested in learning how to work with the project template, please follow the tutorial. Or you can browse the different implementation stages by looking at the commits of this repository:

1. Copy Template
2. Develop Image Processing and Analysis Routine
3. Convert Routine to Reproducible Processing Steps
4. Bundle Processing Steps into a Workflow
5. Add Visualization Notebook
6. Finalize Documentation